14 articles in this issue
Yuanyuan Li and Akira Nakagawara
Neuroblastoma (NB) is one of the most common malignant solid tumors in childhood, which derives from the sympathoadrenal lineage of the neural crest and exhibits extremely heterogeneous biological and clinical behaviors. The infant patients frequently und... see more
Jonathan Bard
Systems biology has two general aims: a narrow one, which is to discover how complex networks of proteins work, and a broader one, which is to integrate the molecular and network data with the generation and function of organism phenotypes. Doing all this... see more
Pablo A. Iglesias
One of the principle tasks of systems biology has been the reverse engineering of signaling networks. Because of the striking similarities to engineering systems, a number of analysis and design tools from engineering disciplines have been used in this pr... see more
Subhadip Raychaudhuri and Somkanya C Raychaudhuri
Apoptotic cell death is coordinated through two distinct (type 1 and type 2) intracellular signaling pathways. How the type 1/type 2 choice is made remains a central problem in the biology of apoptosis and has implications for apoptosis related diseases a... see more
Janina Bahnemann, Negar Rajabi, Grischa Fuge, Oscar Platas Barradas, Jörg Müller, Ralf Pörtner and An-Ping Zeng
For the quantitative analysis of cellular metabolism and its dynamics it is essential to achieve rapid sampling, fast quenching of metabolism and the removal of extracellular metabolites. Common manual sample preparation methods and protocols for cells ar... see more
Driss El Kebir and János G. Filep
Resolution of acute inflammation is an active process that requires inhibition of further leukocyte recruitment and removal of leukocytes from inflamed sites. Emigrated neutrophils undergo apoptosis before being removed by scavenger macrophages. Recent st... see more
Alejandro F. Villaverde, John Ross and Julio R. Banga
Building mathematical models of cellular networks lies at the core of systems biology. It involves, among other tasks, the reconstruction of the structure of interactions between molecular components, which is known as network inference or reverse enginee... see more
Maria Grazia Bottone, Giada Santin, Francesca Aredia, Graziella Bernocchi, Carlo Pellicciari and Anna Ivana Scovassi
An apoptotic program leading to controlled cell dismantling implies perturbations of nuclear dynamics, as well as changes affecting the organelle structure and distribution. In human cancer cells driven to apoptosis by different stimuli, we have recently ... see more
Myong-Hee Sung
Mathematical modeling of signaling and gene regulatory networks has provided unique insights about systems behaviors for many cell biological problems of medical importance. Quantitative single cell monitoring has a crucial role in advancing systems model... see more
Jibran A. Wali, Seth L. Masters and Helen E. Thomas
Pancreatic beta-cell apoptosis is an important feature of islets in type 2 diabetes. Apoptosis can occur through two major pathways, the extrinsic or death receptor mediated pathway, and the intrinsic or Bcl-2-regulated pathway. Hyperglycaemia, hyperlipid... see more
Isaac A. Rodriguez, Scott A. Sell, Jennifer M. McCool, Gunjan Saxena, Andrew J. Spence and Gary L. Bowlin
Ibtissam Echchgadda, Caleb C. Roth, Cesario Z. Cerna and Gerald J. Wilmink
The gene expression kinetics for human cells exposed to hyperthermic stress are not well characterized. In this study, we identified and characterized the genes that are differentially expressed in human epidermal keratinocyte (HEK) cells exposed to hyper... see more
Amanda L. Gruver-Yates and John A. Cidlowski
First described for their metabolic and immunosuppressive effects, glucocorticoids are widely prescribed in clinical settings of inflammation. However, glucocorticoids are also potent inducers of apoptosis in many cell types and tissues. This review will ... see more
Tetyana Shandala, Chiaoxin Lim, Alexandra Sorvina and Douglas A. Brooks
Phagocytosis involves the internalization of extracellular material by invagination of the plasma membrane to form intracellular vesicles called phagosomes, which have functions that include pathogen degradation. The degradative properties of phagosomes a... see more