ARTICLE
TITLE

Genetic diversity of local rice varieties (Oryza sativa L.) in Vietnam’s Mekong Delta based on SSR markers and morphological characteristics

SUMMARY

Based on target traits, use of the genetic diversity of rice is beneficial for crop improvement. In this study, 41 rice varieties local to Vietnam’s Mekong Delta were evaluated on the basis of 11 quantitative morphological traits, along with the assessment of genetic diversity according to 50 SSR markers. The actual yield had a significance level of 0.05, while plant height and panicles per square meter had a high significance level of 0.001. Cluster analysis based on 11 quantitative traits also revealed that two were the optimal number of clusters used in this study. The highest polymorphic information content (PIC) value obtained was for RM286 (0.49), with a range of 0.00 to 0.49 and an average PIC of 0.14. Both structure and phylogenetic tree analyses as inferred from 50 SSR markers by the unweighted pair-group method with arithmetic mean (UPGMA) also indicated that the 41 local rice varieties could be divided into two major groups. This study provides a useful information for Mot bui do cao CM, and Mot bui five varieties for improvements in the yield and intermediate amylose content of local rice-breeding programs in future, especially for the Mekong Delta region.

 Articles related

Tety Hartatik,Slamet Diah Volkandari,S. Sumadi,W. Widodo    

The aim of this study was to determine genetic diversity of Madura cattle using Polymerase Chain Reaction – Restriction Fragment Length Polymorphisms (PCR-RFLP) analysis of the cytochrome b (cytb) gene. Samples used for the experiments were blood of 43 c... see more


Naida Babic Jordamovic, Tamara Kojovic, Serkan Dogan, Larisa Bešic, Lana Salihefendic, Rijad Konjhodžic, Sabahudin Cordic, Vedrana Škaro, Petar Projic, Vesna Hadžiavdic, Adna Ašic, Damir Marjanovic    

Bosnia and Herzegovina is located in the South-Eastern Europe, characterized by numerous historical influences, massive migration processes and complex population structure. For that reason, the aim of this study is to provide an accurate and precise upd... see more


Jasmin Šutkovic, Petar Glamocija, Lutvija Karic, Ahmet Yildirim    

Fifteen Brassica oleracea L. var. acephala DC accessions were collected and evaluated for their genetic diversity and molecular characteristics using 10 previously developed and used codominant SSR markers. The SSR loci used revealed a total of 51 allele... see more


Sri Handayani Irianingsih,Bagoes Poermadjaja,Hastari Wuryastuti,Raden Wasito    

The bovine viral diarrhea virus (BVDV) is a major viral pathogen in cattle worldwide. In Indonesia,  diversity in subgenotypes of BVDV-1 has been observed, with the highest proportion of subgenotype -1a, followed by -1c, -1b, and -1d. So far, phylog... see more


Fajar Nur Sulistyahadi,I Gusti Agung Ayu Ratna Puspitasari,Agus Nuryanto    

Rhacophorus margaritifer is an endemic species of arboreal frog in Java. Previous studies found this frog in several locations of Baturraden, namely in primary forest of Ketenger area, along Pancuran Pitu tourism track, and Baturraden Botanical Garden. T... see more